Package: ibdsegments
Title: Identity by Descent Probability in Pedigrees
Version: 1.0.1
Authors@R: 
    person("Maarten", "Kruijver", , "maarten.kruijver@esr.cri.nz", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6890-7632"))
Description: Identity by Descent (IBD) distributions in pedigrees. A
        Hidden Markov Model is used to compute identity coefficients,
        simulate IBD segments and to derive the distribution of total
        IBD sharing and segment count across chromosomes. The methods
        are applied in Kruijver (2025) <doi:10.3390/genes16050492>. The
        probability that the total IBD sharing is zero can be computed
        using the method of Donnelly (1983)
        <doi:10.1016/0040-5809(83)90004-7>.
License: GPL (>= 2)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp
Imports: Rcpp, pedtools, expm
Suggests: testthat (>= 3.0.0), ribd, ggplot2
Config/testthat/edition: 3
Repository: https://mkruijver.r-universe.dev
Date/Publication: 2025-04-28 09:38:35 UTC
RemoteUrl: https://github.com/mkruijver/ibdsegments
RemoteRef: HEAD
RemoteSha: 04e5b58dbe5aa8b1fe39b6f5aedf09776ae6d765
NeedsCompilation: yes
Packaged: 2026-07-03 05:48:51 UTC; root
Author: Maarten Kruijver [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6890-7632>)
Maintainer: Maarten Kruijver <maarten.kruijver@esr.cri.nz>