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  "Package": "simDNAmixtures",
  "Title": "Simulate Forensic DNA Mixtures",
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  "Authors@R": "person(\"Maarten\", \"Kruijver\", , \"maarten.kruijver@esr.cri.nz\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6890-7632\"))",
  "Description": "Mixed DNA profiles can be sampled according to models for\nprobabilistic genotyping. Peak height variability is modelled\nusing a log normal distribution or a gamma distribution. Sample\ncontributors may be related according to a pedigree.",
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  "Date/Publication": "2025-07-10 03:57:11 UTC",
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    "drop_model",
    "gamma_model",
    "gf_configuration",
    "global_stutter_model",
    "log_normal_model",
    "read_allele_freqs",
    "read_size_regression",
    "read_STRmix_kit_settings",
    "read_stutter_exceptions",
    "read_stutter_regression",
    "read_wide_table",
    "sample_contributor_genotypes",
    "sample_drop_model",
    "sample_gamma_model",
    "sample_genotype",
    "sample_log_normal_model",
    "sample_log_normal_parameters",
    "sample_log_normal_stutter_variance",
    "sample_LSAE",
    "sample_many_pedigree_genotypes",
    "sample_mixture_from_genotypes",
    "sample_mixtures",
    "sample_mixtures_fixed_parameters",
    "sample_mixtures_from_genotypes",
    "sample_offspring",
    "sample_pedigree_genotypes",
    "SMASH_to_wide_table",
    "stutter_type"
  ],
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    {
      "name": "kits",
      "title": "Properties such as loci, dye, sizes for most standard forensic kits",
      "object": "kits",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "allele_specific_stutter_model",
      "title": "Stutter model where the expected stutter rate depends on the allele and locus",
      "topics": [
        "allele_specific_stutter_model"
      ]
    },
    {
      "page": "drop_model",
      "title": "Defines a (semi-continuous) drop model",
      "topics": [
        "drop_model"
      ]
    },
    {
      "page": "gamma_model",
      "title": "Defines a gamma model for peak height variability",
      "topics": [
        "gamma_model"
      ]
    },
    {
      "page": "gf_configuration",
      "title": "Stutters and size regressions for a GlobalFiler 3500 kit",
      "topics": [
        "gf_configuration"
      ]
    },
    {
      "page": "global_stutter_model",
      "title": "Global stutter model where the expected stutter rate is constant across alleles and loci",
      "topics": [
        "global_stutter_model"
      ]
    },
    {
      "page": "kits",
      "title": "Properties such as loci, dye, sizes for most standard forensic kits",
      "topics": [
        "kits"
      ]
    },
    {
      "page": "log_normal_model",
      "title": "Defines a log normal model for peak height variability",
      "topics": [
        "log_normal_model"
      ]
    },
    {
      "page": "read_allele_freqs",
      "title": "Read allele frequencies in FSIgen format (.csv)",
      "topics": [
        "read_allele_freqs"
      ]
    },
    {
      "page": "read_size_regression",
      "title": "Reads a size regression file",
      "topics": [
        "read_size_regression"
      ]
    },
    {
      "page": "read_STRmix_kit_settings",
      "title": "Read STRmix Kit Settings",
      "topics": [
        "read_STRmix_kit_settings"
      ]
    },
    {
      "page": "read_stutter_exceptions",
      "title": "Reads a stutter exceptions file with overrides for expected stutter ratios",
      "topics": [
        "read_stutter_exceptions"
      ]
    },
    {
      "page": "read_stutter_regression",
      "title": "Reads a stutter regression file",
      "topics": [
        "read_stutter_regression"
      ]
    },
    {
      "page": "read_wide_table",
      "title": "Read wide table (.txt) with Allele1, Allele2, ... columns as is",
      "topics": [
        "read_wide_table"
      ]
    },
    {
      "page": "sample_contributor_genotypes",
      "title": "Sample genotypes for mixture contributors according to allele frequencies",
      "topics": [
        "sample_contributor_genotypes"
      ]
    },
    {
      "page": "sample_drop_model",
      "title": "Sample drop model(s) with parameters according to priors",
      "topics": [
        "sample_drop_model"
      ]
    },
    {
      "page": "sample_gamma_model",
      "title": "Sample gamma model(s) with parameters according to priors",
      "topics": [
        "sample_gamma_model"
      ]
    },
    {
      "page": "sample_genotype",
      "title": "Sample a genotype according to allele frequencies",
      "topics": [
        "sample_genotype"
      ]
    },
    {
      "page": "sample_log_normal_model",
      "title": "Sample log normal model(s) with parameters according to priors",
      "topics": [
        "sample_log_normal_model"
      ]
    },
    {
      "page": "sample_log_normal_parameters",
      "title": "Sample log normal model parameters according to priors",
      "topics": [
        "sample_log_normal_parameters"
      ]
    },
    {
      "page": "sample_log_normal_stutter_variance",
      "title": "Sample log normal stutter variance parameters according to priors",
      "topics": [
        "sample_log_normal_stutter_variance"
      ]
    },
    {
      "page": "sample_LSAE",
      "title": "Sample Locus Specific Amplification Efficiency (LSAE) according to prior",
      "topics": [
        "sample_LSAE"
      ]
    },
    {
      "page": "sample_many_pedigree_genotypes",
      "title": "Sample (many) genotypes for pedigree members according to allele frequencies by allele dropping and possibly taking linkage into account by simulating recombination.",
      "topics": [
        "sample_many_pedigree_genotypes"
      ]
    },
    {
      "page": "sample_mixture_from_genotypes",
      "title": "Sample mixture profile with provided genotypes",
      "topics": [
        "sample_mixture_from_genotypes"
      ]
    },
    {
      "page": "sample_mixtures",
      "title": "Sample mixtures with random genotypes and random parameters according to priors",
      "topics": [
        "sample_mixtures"
      ]
    },
    {
      "page": "sample_mixtures_fixed_parameters",
      "title": "Sample mixtures with known genotypes and fixed parameters",
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        "sample_mixtures_fixed_parameters"
      ]
    },
    {
      "page": "sample_mixtures_from_genotypes",
      "title": "Sample mixtures with known genotypes and random parameters according to priors",
      "topics": [
        "sample_mixtures_from_genotypes"
      ]
    },
    {
      "page": "sample_offspring",
      "title": "Sample offspring from two parental genotypes",
      "topics": [
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      ]
    },
    {
      "page": "sample_pedigree_genotypes",
      "title": "Sample genotypes for pedigree according to allele frequencies by allele dropping.",
      "topics": [
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      ]
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      ]
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      "title": "Defines a stutter type to be used in the allele specific stutter model.",
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      ]
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